Scaffold Ga0167668_1000841

Overview

Basic Information

• Taxon OID: 3300015193
• Scaffold ID: Ga0167668_1000841
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6141
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Rabots glacier, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.872223
  • Long. (^o): 16.713705
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040820	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167668_10008412	F040820	N/A	VGTDIVAVIVSDDGKTAYMADSAPGDVYAVRLPDLQVSWKQHVGGAPFGLLLHGGRLFVSLFDTTSVLELDPSSGQKLATDSVPQGPAVMTTDGAGHVVVAGTRGQLSIIGGGQLAAGNGFGVAWVGGQLWSADYERAELVPAGDGHRVGLPLPVFPFWLAAGAGDSLLIAAEGGTEDTDPGGVFSFDTMNGSFTTLATPKDPDQVLQSGSTIFVAAHGDRDVLAIQPGSTKAWAGGAAAVALAADAPLGYLVVAVNAHE*